Gramm-x Public Web Server for Protein-protein Docking.
From: Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA. andrey@ku.edu
Nucleic acids research
- Publish Date: Jul 2006
- ISSN: 1362-4962
- Volume: 34
- Issue: Web Server issue
- Pages: W310-4
- Medium: Internet
- Language: English
- Citation (JAMA): Tovchigrechko Andrey, Vakser Ilya A, et al. Gramm-x Public Web Server for Protein-protein Docking.. Nucleic Acids Res. Jul 2006;34:W310-4
Abstract
Protein docking software GRAMM-X and its web interface (http://vakser.bioinformatics.ku.edu/resources/gramm/grammx) extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software and maintaining large hardware resources needed for protein docking simulations. Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track.
Mesh Headings (Keywords): Binding Sites, Computational Biology, Internet, Ligands, Models, Molecular, Multiprotein Complexes, Software, User-Computer Interface
Check for Full Text / PubMed Unique Identifier (PMID): 16845016
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