Topic: Algorithms

Journal: Bmc Bioinformatics

Documents

A list of abstracts that contain a topic of "Algorithms" and a journal name of "Bmc Bioinformatics".

• Multipolar Representation of Protein Structure.

  PMID: 16674828

• Genelibrarian: an Effective Gene-information Summarization and Visualization System.

  PMID: 16939640

• A Novel Approach to Phylogenetic Tree Construction Using Stochastic Optimization and Clustering.

  PMID: 17217517

• Gonome: Measuring Correlations Between Go Terms and Genomic Positions.

  PMID: 16504139

• A Computational Approach for Detecting Peptidases and Their Specific Inhibitors at the Genome Level.

  PMID: 17430570

• 160-fold Acceleration of the Smith-waterman Algorithm Using a Field Programmable Gate Array (Fpga).

  PMID: 17555593

• Hybrid Elementary Flux Analysis/Nonparametric Modeling: Application for Bioprocess Control.

  PMID: 17261182

• A Quantitative Analysis of Secondary Rna Structure Using Domination Based Parameters on Trees.

  PMID: 16515683

• Crispr Recognition Tool (Crt): a Tool for Automatic Detection of Clustered Regularly Interspaced Palindromic Repeats.

  PMID: 17577412

• Gene Models from Ests (Genemodelest): an Application on the Solanum Lycopersicum Genome.

  PMID: 17430576

• Automatic Recognition of Topic-classified Relations Between Prostate Cancer and Genes Using Medline Abstracts.

  PMID: 17134477

• Lower Bounds on Multiple Sequence Alignment Using Exact 3-way Alignment.

  PMID: 17470273

• Maximum Common Subgraph: Some Upper Bound and Lower Bound Results.

  PMID: 17217524

• Pipe: a Protein-protein Interaction Prediction Engine Based on the Re-occurring Short Polypeptide Sequences Between Known Interacting Protein Pairs.

  PMID: 16872538

• Missing Value Estimation for Dna Microarray Gene Expression Data by Support Vector Regression Imputation and Orthogonal Coding Scheme.

  PMID: 16426462

• An Integrated Approach to the Prediction of Domain-domain Interactions.

  PMID: 16725050

• A Probabilistic Classifier for Olfactory Receptor Pseudogenes.

  PMID: 16939646

• Building Multiclass Classifiers for Remote Homology Detection and Fold Recognition.

  PMID: 17042943

• Hoxpred: Automated Classification of Hox Proteins Using Combinations of Generalised Profiles.

  PMID: 17626621

• Cpgcluster: a Distance-based Algorithm for Cpg-island Detection.

  PMID: 17038168

• Crnpred: Highly Accurate Prediction of One-dimensional Protein Structures by Large-scale Critical Random Networks.

  PMID: 16952323

• Projections for Fast Protein Structure Retrieval.

  PMID: 17254310

• Rank-statistics Based Enrichment-site Prediction Algorithm Developed for Chromatin Immunoprecipitation on Chip Experiments.

  PMID: 17022824

• Effect of Various Normalization Methods on Applied Biosystems Expression Array System Data.

  PMID: 17173684

• Msbayes: Pipeline for Testing Comparative Phylogeographic Histories Using Hierarchical Approximate Bayesian Computation.

  PMID: 17655753

• Choosing the Best Heuristic for Seeded Alignment of Dna Sequences.

  PMID: 16533404

• Orthology Prediction at Scalable Resolution by Phylogenetic Tree Analysis.

  PMID: 17346331

• Modeling Biochemical Transformation Processes and Information Processing with Narrator.

  PMID: 17389034

• Robust Detection and Verification of Linear Relationships to Generate Metabolic Networks Using Estimates of Technical Errors.

  PMID: 17517139

• Improving Model Predictions for Rna Interference Activities That Use Support Vector Machine Regression by Combining and Filtering Features.

  PMID: 17553157

• An Efficient Pseudomedian Filter for Tiling Microrrays.

  PMID: 17555595

• Accelerated Search for Biomolecular Network Models to Interpret High-throughput Experimental Data.

  PMID: 17640351

• Genome Bioinformatic Analysis of Nonsynonymous Snps.

  PMID: 17708757

• Scoring Functions and Enrichment: a Case Study on Hsp90.

  PMID: 17257425

• Bayesian Detection of Periodic Mrna Time Profiles Without Use of Training Examples.

  PMID: 16469110

• Qpath: a Method for Querying Pathways in a Protein-protein Interaction Network.

  PMID: 16606460

• Goulphar: Rapid Access and Expertise for Standard Two-color Microarray Normalization Methods.

  PMID: 17059595

• Logarithmic Gap Costs Decrease Alignment Accuracy.

  PMID: 17147805

• Recursive Gene Selection Based on Maximum Margin Criterion: a Comparison with Svm-rfe.

  PMID: 17187691

• Ash Structure Alignment Package: Sensitivity and Selectivity in Domain Classification.

  PMID: 17407606

• Orthogonal Projections to Latent Structures As a Strategy for Microarray Data Normalization.

  PMID: 17577396

• Optimization Based Automated Curation of Metabolic Reconstructions.

  PMID: 17584497

• Progressive Multiple Sequence Alignments from Triplets.

  PMID: 17631683

• Classification of Protein Quaternary Structure by Functional Domain Composition.

  PMID: 16584572

• Statistical Inference of Chromosomal Homology Based on Gene Colinearity and Applications to Arabidopsis and Rice.

  PMID: 17038171

• Tprpred: a Tool for Prediction of Tpr-, Ppr- and Sel1-like Repeats from Protein Sequences.

  PMID: 17199898

• Discarding Duplicate Ditags in Longsage Analysis May Introduce Significant Error.

  PMID: 17359537

• Portraits of Breast Cancer Progression.

  PMID: 17683614

• Ebbie: Automated Analysis and Storage of Small Rna Cloning Data Using a Dynamic Web Server.

  PMID: 16584563

• The Utility of Mas5 Expression Summary and Detection Call Algorithms.

  PMID: 17663764

• Pare: a Tool for Comparing Protein Abundance and Mrna Expression Data.

  PMID: 17718915

• Approximation Properties of Haplotype Tagging.

  PMID: 16401341

• Integrated Biclustering of Heterogeneous Genome-wide Datasets for the Inference of Global Regulatory Networks.

  PMID: 16749936

• Emd: an Ensemble Algorithm for Discovering Regulatory Motifs in Dna Sequences.

  PMID: 16839417

• Gene Function Prediction Based on Genomic Context Clustering and Discriminative Learning: an Application to Bacteriophages.

  PMID: 17570149

• Houghfeature, a Novel Method for Assessing Drug Effects in Three-color Cdna Microarray Experiments.

  PMID: 17634089

• Impact of Rna Structure on the Prediction of Donor and Acceptor Splice Sites.

  PMID: 16772025

• Idconverter and Idclight: Conversion and Annotation of Gene and Protein Ids.

  PMID: 17214880

• Zcurve_v: a New Self-training System for Recognizing Protein-coding Genes in Viral and Phage Genomes.

  PMID: 16401352

• Utilization of Two Sample T-test Statistics from Redundant Probe Sets to Evaluate Different Probe Set Algorithms in Genechip Studies.

  PMID: 16403228

• Length-dependent Prediction of Protein Intrinsic Disorder.

  PMID: 16618368

• Using Ests to Improve the Accuracy of De Novo Gene Prediction.

  PMID: 16817966

• Svm-based Prediction of Caspase Substrate Cleavage Sites.

  PMID: 17254298

• Using Indirect Protein Interactions for the Prediction of Gene Ontology Functions.

  PMID: 17570151

• A Comprehensive Evaluation of Sam, the Sam R-package and a Simple Modification to Improve Its Performance.

  PMID: 17603887

• Improved Classification Accuracy in 1- and 2-dimensional Nmr Metabolomics Data Using the Variance Stabilising Generalised Logarithm Transformation.

  PMID: 17605789

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