Topic: Binding Sites

Journal: Nucleic Acids Research

Documents

A list of abstracts that contain a topic of "Binding Sites" and a journal name of "Nucleic Acids Research".

• Molecular Localization of a Ribosome-dependent Atpase on Escherichia Coli Ribosomes.

  PMID: 16495476

• 3d Reconstruction and Comparison of Shapes of Dna Minicircles Observed by Cryo-electron Microscopy.

  PMID: 17012274

• Pi2pe: Protein Interface/Interior Prediction Engine.

  PMID: 17526530

• The Genomic Hdv Ribozyme Utilizes a Previously Unnoticed U-turn Motif to Accomplish Fast Site-specific Catalysis.

  PMID: 17337436

• Rnabindr: a Server for Analyzing and Predicting Rna-binding Sites in Proteins.

  PMID: 17483510

• Complexed Crystal Structure of Replication Restart Primosome Protein Prib Reveals a Novel Single-stranded Dna-binding Mode.

  PMID: 16899446

• Scoppi: a Structural Classification of Protein-protein Interfaces.

  PMID: 16381874

• Daxx Interacts with Phage Phic31 Integrase and Inhibits Recombination.

  PMID: 17098929

• Recovering Motifs from Biased Genomes: Application of Signal Correction.

  PMID: 16990246

• Specific Binding of a Hexanucleotide to Hiv-1 Reverse Transcriptase: a Novel Class of Bioactive Molecules.

  PMID: 17038335

• A New Systematic Computational Approach to Predicting Target Genes of Transcription Factors.

  PMID: 17576669

• Amino Acid Residue Doublet Propensity in the Protein-rna Interface and Its Application to Rna Interface Prediction.

  PMID: 17130160

• Physical and Functional Interactions Between Werner Syndrome Helicase and Mismatch-repair Initiation Factors.

  PMID: 17715146

• Abs: a Database of Annotated Regulatory Binding Sites from Orthologous Promoters.

  PMID: 16381947

• Dna Sequence-specific Recognition by a Transcriptional Regulator Requires Indirect Readout of A-tracts.

  PMID: 17452358

• Dna Topoisomerase Ii Selects Dna Cleavage Sites Based on Reactivity Rather Than Binding Affinity.

  PMID: 17517767

• New, Extended Hairpin Form of the Tar-2 Rna Domain Points to the Structural Polymorphism at the 5' End of the Hiv-2 Leader Rna.

  PMID: 16738137

• Jpredictor: a Versatile Tool for the Prediction of Cis-regulatory Elements.

  PMID: 16845067

• Site-specific Labeling of Supercoiled Dna.

  PMID: 16963492

• Computational Analysis of Tissue-specific Combinatorial Gene Regulation: Predicting Interaction Between Transcription Factors in Human Tissues.

  PMID: 16982645

• Dynamics of Dnmt1 Interaction with the Replication Machinery and Its Role in Postreplicative Maintenance of Dna Methylation.

  PMID: 17576694

• Firedb--a Database of Functionally Important Residues from Proteins of Known Structure.

  PMID: 17132832

• Transcription Factor Distribution in Escherichia Coli: Studies with Fnr Protein.

  PMID: 17164287

• A Tripartite Dna-binding Element, Comprised of the Nuclear Localization Signal and Two At-hook Motifs, Mediates the Association of Ledgf/P75 with Chromatin in Vivo.

  PMID: 16549878

• Induction of Single Chain Tetracycline Repressor Requires the Binding of Two Inducers.

  PMID: 16899452

• Genometrafac: a Whole Genome Resource for the Detection of Transcription Factor Binding Site Clusters Associated with Conventional and Microrna Encoding Genes Conserved Between Mouse and Human Gene Orthologs.

  PMID: 17178752

• P53 and P73 Display Common and Distinct Requirements for Sequence Specific Binding to Dna.

  PMID: 17170001

• Orphan Nuclear Receptor Tr2, a Mediator of Preadipocyte Proliferation, is Differentially Regulated by Ra Through Exchange of Coactivator Pcaf with Corepressor Rip140 on a Platform Molecule Grip1.

  PMID: 17389641

• Improved Identification of Enriched Peptide Rna Cross-links from Ribonucleoprotein Particles (Rnps) by Mass Spectrometry.

  PMID: 17652325

• Poxo: a Web-enabled Tool Series to Discover Transcription Factor Binding Sites.

  PMID: 16845065

• Gramm-x Public Web Server for Protein-protein Docking.

  PMID: 16845016

• Regulation of B Family Dna Polymerase Fidelity by a Conserved Active Site Residue: Characterization of M644w, M644l and M644f Mutants of Yeast Dna Polymerase Epsilon.

  PMID: 17452367

• Stability of the 'l12 Stalk' in Ribosomes from Mesophilic and (Hyper)thermophilic Archaea and Bacteria.

  PMID: 17053098

• Nspc1 is a Cell Growth Regulator That Acts As a Transcriptional Repressor of P21waf1/Cip1 Via the Rare Element.

  PMID: 17088287

• Selective Use of Multiple Vitamin D Response Elements Underlies the 1 Alpha,25-dihydroxyvitamin D3-mediated Negative Regulation of the Human Cyp27b1 Gene.

  PMID: 17426122

• Enantioselectivity of Human Amp, Dtmp and Ump-cmp Kinases.

  PMID: 17626051

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