Topic: Molecular Sequence Data

Journal: Bioinformatics (Oxford, England)

Documents

A list of abstracts that contain a topic of "Molecular Sequence Data" and a journal name of "Bioinformatics (Oxford, England)".

• Alvira: Comparative Genomics of Viral Strains.

  PMID: 17550913

• Guugle: a Utility for Fast Exact Matching Under Rna Complementary Rules Including G-u Base Pairing.

  PMID: 16403789

• A Probabilistic Approach to Protein Backbone Tracing in Electron Density Maps.

  PMID: 16873525

• Method for Identifying Transcription Factor Binding Sites in Yeast.

  PMID: 16644789

• Cobalt: Constraint-based Alignment Tool for Multiple Protein Sequences.

  PMID: 17332019

• Multiple Alignment of Protein Structures and Sequences for Vmd.

  PMID: 16339280

• Multiloc: Prediction of Protein Subcellular Localization Using N-terminal Targeting Sequences, Sequence Motifs and Amino Acid Composition.

  PMID: 16428265

• Quaternionic Periodicity Transform: an Algebraic Solution to the Tandem Repeat Detection Problem.

  PMID: 17237057

• Cbrother: Relaxing Parental Tree Assumptions for Bayesian Recombination Detection.

  PMID: 17145740

• Equivalent Binding Sites Reveal Convergently Evolved Interaction Motifs.

  PMID: 16287935

• Rankmotif++: a Motif-search Algorithm That Accounts for Relative Ranks of K-mers in Binding Transcription Factors.

  PMID: 17646348

• 'protein Peeling': an Approach for Splitting a 3d Protein Structure into Compact Fragments.

  PMID: 16301202

• Combining Multi-species Genomic Data for Microrna Identification Using a Naive Bayes Classifier.

  PMID: 16543277

• Stral: Progressive Alignment of Non-coding Rna Using Base Pairing Probability Vectors in Quadratic Time.

  PMID: 16613908

• Identifying Cycling Genes by Combining Sequence Homology and Expression Data.

  PMID: 16873488

• On the Derivation of Propensity Scales for Predicting Exposed Transmembrane Residues of Helical Membrane Proteins.

  PMID: 17237049

• A Sequential Monte Carlo Em Approach to the Transcription Factor Binding Site Identification Problem.

  PMID: 17387112

• Sciroko: a New Tool for Whole Genome Microsatellite Search and Investigation.

  PMID: 17463017

• Improved Pruning Algorithms and Divide-and-conquer Strategies for Dead-end Elimination, with Application to Protein Design.

  PMID: 16873469

• Indel Seeds for Homology Search.

  PMID: 16873491

• Nested Containment List (Nclist): a New Algorithm for Accelerating Interval Query of Genome Alignment and Interval Databases.

  PMID: 17234640

• Rna Sampler: a New Sampling Based Algorithm for Common Rna Secondary Structure Prediction and Structural Alignment.

  PMID: 17537756

• The Ucsc Known Genes.

  PMID: 16500937

• Thermodynamics of Rna-rna Binding.

  PMID: 16446276

• Ribosomal Rna As Molecular Barcodes: a Simple Correlation Analysis Without Sequence Alignment.

  PMID: 16613905

• Tuple_plot: Fast Pairwise Nucleotide Sequence Comparison with Noise Suppression.

  PMID: 16766553

• Inferring Protein-dna Dependencies Using Motif Alignments and Mutual Information.

  PMID: 17646310

• An Approach to Predict Transcription Factor Dna Binding Site Specificity Based Upon Gene and Transcription Factor Functional Categorization.

  PMID: 17623704

• Application of Latent Semantic Analysis to Protein Remote Homology Detection.

  PMID: 16317074

• Deleterious Snp Prediction: Be Mindful of Your Training Data!

  PMID: 17234639

• In Search of the Small Ones: Improved Prediction of Short Exons in Vertebrates, Plants, Fungi and Protists.

  PMID: 17204465

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